Emacs: Fix org-clock opening up all your agenda files

.config/emacs/init.org

@@ -2451,7 +2451,64 @@ and there's no need for a middle-man when it's already been implemented.
 (setq org-directory "~/Notes/")
 
 (evil-define-key 'normal calendar-mode-map (kbd "RET") #'org-calendar-select)
+;; This is for org-clock-report
+(setq org-duration-format 'h:mm)
 #+end_src
+
+There's an issue when I invoke ~org-clock-in~ where it seems to search all my
+~org-agenda-files~ for any open clocks. This is a bit annoying as it opens all
+these files whenever I clock in, making clocking in slow. This fixes it but then
+existing clocks don't get resolved.
+
+Here's a github [[https://github.com/doomemacs/doomemacs/issues/5317][issue]] describing a little bit about the problem;
+
+#+begin_src emacs-lisp
+(with-eval-after-load 'org-clock
+  (defun joe/org-files-list ()
+    "A version of `org-files-list' that doesn't open all `org-agenda-files'"
+    (let ((files '()))
+      (dolist (buf (buffer-list))
+        (with-current-buffer buf
+          (when (and (derived-mode-p 'org-mode) (buffer-file-name))
+            (cl-pushnew (expand-file-name (buffer-file-name)) files
+                        :test #'equal))))
+      files))
+
+  (defun org-resolve-clocks (&optional only-dangling-p prompt-fn last-valid)
+    "Resolve all currently open Org clocks.
+If `only-dangling-p' is non-nil, only ask to resolve dangling
+\(i.e., not currently open and valid) clocks."
+    (interactive "P")
+    (unless org-clock-resolving-clocks
+      (let ((org-clock-resolving-clocks t))
+        (dolist (file (joe/org-files-list))
+          (let ((clocks (org-find-open-clocks file)))
+            (dolist (clock clocks)
+              (let ((dangling (or (not (org-clock-is-active))
+                                  (/= (car clock) org-clock-marker))))
+                (if (or (not only-dangling-p) dangling)
+                    (org-clock-resolve
+                     clock
+                     (or prompt-fn
+                         (lambda (clock)
+                           (format
+                            "Dangling clock started %d mins ago"
+                            (floor (org-time-convert-to-integer
+                                    (time-since (cdr clock)))
+                                   60))))
+                     (or last-valid
+                         (cdr clock))))))))))))
+#+end_src
+
+In this modified function, =dolist= processes the list returned by =buffer-list=
+instead of =org-files-list=. For each buffer in the list, we switch to it with
+=with-current-buffer= and then test if its major mode is =org-mode=. If it is, we
+process the clocks in that buffer as before. We find open clocks in the current
+buffer's associated file using =(buffer-file-name buffer)=. It's assumed that all
+Org mode buffers have associated files.
+#+end_src
+
+
 *** Visuals
 #+begin_src emacs-lisp